DeepBrainSeg
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DeepBrainSeg
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A
Aboutus() (in module ui.DeepBrainSegUI_support)
adjust_classes() (in module DeepBrainSeg.helpers.utils)
adjust_classes_air_brain_tumour() (in module DeepBrainSeg.helpers.utils)
ANTS_skull_stripping() (in module DeepBrainSeg.brainmask.antsmask)
apply_argmax_to_logits() (in module DeepBrainSeg.helpers.utils)
AxialScroll() (in module ui.DeepBrainSegUI_support)
B
bbox() (in module DeepBrainSeg.helpers.utils)
bet_skull_stripping() (in module DeepBrainSeg.brainmask.hdbetmask)
C
class_wise_cc() (in module DeepBrainSeg.helpers.postprocessing)
clip() (in module DeepBrainSeg.helpers.preprocessing)
combine_logits_AM() (in module DeepBrainSeg.helpers.utils)
combine_logits_GM() (in module DeepBrainSeg.helpers.utils)
combine_mask_prediction() (in module DeepBrainSeg.helpers.utils)
combine_predictions_AM() (in module DeepBrainSeg.helpers.utils)
combine_predictions_GM() (in module DeepBrainSeg.helpers.utils)
connected_components() (in module DeepBrainSeg.helpers.postprocessing)
convert5class_logitsto_4class() (in module DeepBrainSeg.helpers.utils)
convert_image() (in module DeepBrainSeg.helpers.utils)
convertDcm2nifti() (in module DeepBrainSeg.helpers.dcm2niftii)
Coregistration (class in DeepBrainSeg.registration.registration)
correct_image() (in module ui.helpers)
CorronalScroll() (in module ui.DeepBrainSegUI_support)
D
dcm_loader (class in DeepBrainSeg.readers.dicom)
DeepBrainSeg (module)
DeepBrainSeg.brainmask (module)
DeepBrainSeg.brainmask.antsmask (module)
DeepBrainSeg.brainmask.hdbetmask (module)
DeepBrainSeg.brainmask.models (module)
DeepBrainSeg.helpers (module)
DeepBrainSeg.helpers.dcm2niftii (module)
DeepBrainSeg.helpers.npanalysis (module)
DeepBrainSeg.helpers.postprocessing (module)
DeepBrainSeg.helpers.preprocessing (module)
DeepBrainSeg.helpers.utils (module)
DeepBrainSeg.readers (module)
DeepBrainSeg.readers.dicom (module)
DeepBrainSeg.readers.nib (module)
DeepBrainSeg.registration (module)
DeepBrainSeg.registration.registration (module)
DeepBrainSeg.wholebrain (module)
densecrf() (in module DeepBrainSeg.helpers.postprocessing)
destroy_window() (in module ui.DeepBrainSegUI_support)
F
FlairView() (in module ui.DeepBrainSegUI_support)
G
get_ants_mask() (in module DeepBrainSeg.brainmask.antsmask)
get_bet_mask() (in module DeepBrainSeg.brainmask.hdbetmask)
get_brain_mask() (in module DeepBrainSeg.brainmask)
(in module DeepBrainSeg.helpers.utils)
get_dice_score() (in module DeepBrainSeg.helpers.utils)
get_enhancing_tumor() (in module DeepBrainSeg.helpers.utils)
Get_Segmentation() (in module ui.DeepBrainSegUI_support)
get_tumor_core() (in module DeepBrainSeg.helpers.utils)
get_whole_tumor() (in module DeepBrainSeg.helpers.utils)
GetRadiomics() (in module ui.DeepBrainSegUI_support)
I
imshow() (in module DeepBrainSeg.helpers.utils)
init() (in module ui.DeepBrainSegUI_support)
L
Load_Flair() (in module ui.DeepBrainSegUI_support)
Load_T1() (in module ui.DeepBrainSegUI_support)
Load_T1ce() (in module ui.DeepBrainSegUI_support)
Load_T2() (in module ui.DeepBrainSegUI_support)
load_vol() (DeepBrainSeg.readers.dicom.dcm_loader method)
(DeepBrainSeg.readers.nib.nib_loader method)
M
maybe_install_ants() (in module DeepBrainSeg.brainmask)
maybe_install_bet() (in module DeepBrainSeg.brainmask)
N
nib_loader (class in DeepBrainSeg.readers.nib)
normalize() (in module DeepBrainSeg.helpers.preprocessing)
npanalysis() (in module DeepBrainSeg.helpers.npanalysis)
R
register_patient() (DeepBrainSeg.registration.registration.Coregistration method)
resample3D() (in module DeepBrainSeg.helpers.preprocessing)
resize_sitk_3D() (DeepBrainSeg.registration.registration.Coregistration method)
S
SagitalScroll() (in module ui.DeepBrainSegUI_support)
save_volume() (in module DeepBrainSeg.helpers.utils)
scale_every_slice_between_0_to_255() (in module DeepBrainSeg.helpers.utils)
SegmentationOverlay() (in module ui.DeepBrainSegUI_support)
set_Tk_var() (in module ui.DeepBrainSegUI_support)
singleDicom2nifti() (in module DeepBrainSeg.helpers.dcm2niftii)
standardize() (in module DeepBrainSeg.helpers.preprocessing)
T
T1ceView() (in module ui.DeepBrainSegUI_support)
T1View() (in module ui.DeepBrainSegUI_support)
T2View() (in module ui.DeepBrainSegUI_support)
U
ui (module)
ui.DeepBrainSegUI_support (module)
ui.helpers (module)
W
write_vol() (DeepBrainSeg.readers.dicom.dcm_loader method)
(DeepBrainSeg.readers.nib.nib_loader method)
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